Recent Publications

Huang, Y. and Huang, J. 2023. Analysis of plant expression profiles revealed that aphid attack triggered dynamic defense responses in sorghum plant. Front. Genet. 14:1194273.

Eiseman, Charles S., Armin Namayandeh, John van der Linden, and Michael W. Palmer. 2023. Metriocnemus erythranthei sp. nov. and Limnophyes viribus sp. nov. (Diptera: Chironomidae: Orthocladiinae): leafminers of monkeyflowers, speedwells, and other herbaceous plants, with new observations on the ecology and habitats of other leaf-mining Chironomidae. Zootaxa 5249(1): 41–68.

Shrestha, K. & Huang, Y. 2023. Comparative Transcriptomic and Metabolomic Analyses of Resistant and Susceptible Sorghum Genotypes in Response to Sugarcane Aphid Infestation Plant and Animal Genome 30 (Jan13-18)

Pant, S. & Huang, Y. 2022. Genome-wide studies of PAL genes in sorghum and their responses to aphid infestation. Scientific Reports 12, 22537 (2022).

Huang, J.; Shrestha, K.; Huang, Y. Revealing Differential Expression of Phytohormones in Sorghum in Response to Aphid Attack Using the Metabolomics Approach. Int. J. Mol. Sci. 2022, 23, 13782.

Zhang, H., Huang, J. & Huang, Y. 2022. Identification and characterization of plant resistance genes (R genes) in sorghum and their involvement in plant defense against aphids. Plant Growth Regulation 96:443-461.

Franks, D.T., T.J. Sabella & W.J. Henley. 2022. Minimum nitrogen cell quota for maximal growth rate in cycloturbidostat cultures of Picochlorum oklahomense. Algal Research 67:102818.

Wang Y, Goertz NJ, Rillo E, Yang M (2022) Negative regulation of seed germination by maternal AFB1 and AFB5 in Arabidopsis. Bioscience Reports,

Shrestha, K., & Huang, Y. (2022). Genome-wide characterization of sorghum JAZ gene family and their response to phytohormones treatment and aphid infestation. Scientific Reports 12, 3238 (2022).

Juárez-Jaimes, V., L. O. Rodríguez-Morales, M. Paniagua-Ibáñez, G. M. Hernández-Barón, and M. Fishbein. 2022. Riqueza y distribución del género Asclepias (Apocynaceae: Asclepiadoideae) en México. Revista Mexicana de Biodiversidad 93:e933958.

Shrestha, K., Pant, S., & Huang, Y. (2021). Genome-wide identification and classification of Lipoxygenase gene family and their roles in sorghum-aphid interaction. Plant Molecular Biology, 1-15.

Bitencourt, C., N. M. Nürk, A. Rapini, M. Fishbein, A. O. Simões, D. J. Middleton, U. Meve, M. E. Endress, and S. Liede-Schumann. 2021. Evolution of dispersal, habit, and pollination in Africa pushed Apocynaceae diversification after the Eocene-Oligocene climate transition. Frontiers in Ecology and Evolution 9: 719741.

Yang M, Wang Y, Guo L, Liu C-M (2021) Complex haploinsufficient interaction between APC11 and CYCLIN A1;2/TARDY ASYNCHRONOUS MEIOSIS in embryo development and seed germination in Arabidopsis. F1000Research,

Wu H, Hu M, Yang M (2021) Nymphaea colorata, another basal angiosperm species with bidirectional cytokinesis in microsporogenesis. Plant Signal Behav,

C. Eiseman, O. Lonsdale, J. Van Der Linden, T. Feldman, M.W. Palmer. 2021. Thirteen new species of Agromyzidae (Diptera) from the United States, with new host and distrivution records for 32 additional species. Zootaxa 4931 (1): 001-068.

Hu M, Bai M, Yang M*, Wu H* (2021) Cell polarity, asynchronous nuclear divisions, and bidirectional cytokinesis in male meiosis in Magnolia denudata. Protoplasma,
*Co-corresponding author.

Bachelot B., Alonso-Rodríguez A.M., Aldrich-Wolfe L., Cavaleri M.A., Reed S.C., and Wood T.E. (2020). Altered climate leads to positive density-dependent feedbacks in a tropical rainforest. Global Change Ecology.

Howe-kerr L., Bachelot B., Wright R.M., Kendel C.D.; Bay L.K., and Correa A.M.S. (2020). Symbiont community diversity is more variable in host genets that respond poorly to stress. Global Change Ecology.

Bachelot B., and C. Lee (2020). Disturbances can promote and hinder coexistence of competitors in on-going partner choice mutualism. The American Naturalist.

Govindarajulu, R., A.N. Henderson, Y. Xiao, S.R. Chaluvadi, M. Mauro-Herrera, M.L. Siddoway, C.Whipple, J.L. Bennetzen, K.M. Devos, A.N. Doust, J.S. Hawkins. 2020. Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum. bioRxiv, .

Straub, S. C. K., J. Boutte, M. Fishbein, and T. Livshultz. 2020. Enabling evolutionary studies at multiple scales in Apocynaceae through Hyb-Seq. Applications in Plant Sciences 8:e11400.

Fishbein, M. 2020. Apocynaceae. In Meyers, S., T. Jaster, K. E. Mitchell, and L. K. Hardison (eds). Flora of Oregon, Volume 2: Adoxaceae to Fagaceae. Botanical Research Institute of Texas Press, Fort Worth.

Yoo H*, Greene GH*, Yuan M*, Xu G, Burton D, Liu L, Marqués J and Dong X. (2020) Translational Regulation of Metabolic Dynamics during Effector-Triggered Immunity. Molecular Plant 13:88-98

Boute, J., M. Fishbein, A. Liston, and S. C. K. Straub. 2019. NGS-Indel Coder: A new pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (Asclepias). Molecular Phylogenetics and Evolution 139:106534.

Yu, Y., Hu, H. Doust, A.N., and E.A. Kellogg. 2019. Divergent gene expression networks underlie morphological diversity of abscission zones in grasses. New Phytologist.

Yang LZ, Yang M (2019) Modeling biological oscillations: integration of short reaction pauses into a stationary model of a negative feedback loop generates sustained long oscillations. J Comp Biol, 26: 1050-1066

Henley, W.J. 2019. The past, present and future of algal continuous cultures in basic research and commercial applications. Algal Research. 

Katy E. Jones, Tomáš Fér, Roswitha E. Schmickl, Rebecca B. Dikow, Vicki A. Funk, Sonia Herrando‐Moraira, Paul R. Johnston, Norbert Kilian, Carolina M. Siniscalchi, Alfonso Susanna, Marek Slovák, Ramhari Thapa, Linda E. Watson, Jennifer R. Mandel. 2019. An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae. Applications in Plant Sciences. 10(7)

Meinke DW (2019) Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. New Phytol

Gould, E., J. Sparks, M. Fishbein, and A. Agrawal. 2019. Integrated metabolic strategy: a mechanistic framework for predicting the evolution of carbon gain and water loss tradeoffs within plant clades. Journal of Ecology 107: 1633-1644.

Ollerton, J., Fishbein, M., et al. 2019. The diversity of pollination systems in large plant clades: Apocynaceae as a case study. Annals of Botany 123:311-325

Mandel, Jennifer R., Rebecca B. Dikow, Carolina M. Siniscalchia, Ramhari Thapaa, Linda E. Watson, and Vicki A. Funk. 2019. A fully resolved backbone phylogeny reveals numerous and explosive diversifications throughout the history of Asteraceae. Proceedings of the National Academy of Sciences. doi:10.1073/pnas.1903871116

Susannah B.J. and Watson, Linda. 2018 (invited special issue, Phylogenetic Exploration of Medicinal Plants Diversity). Comparing medicinal uses of Cochlospermaceae throughout its range with insights from molecular phylogenetics. Diversity. 10(4), 123;

He H, Bai M, Tong P, Hu Y, Yang M*, Wu H* (2018) CELLULASE 6 and MANNANASE 7 affect cell differentiation and silique dehiscence. Plant Physiol 176: 2186-2201. *Corresponding author.

Yang M, Yang LZ (2018) Determining a reasonable range of relative numerical tolerance values for simulating deterministic models of biochemical reactions. J Comp Biol DOI: 10.1089/cmb.2018.0026

McDonnell A, Parks M, and Fishbein M. 2018. Multilocus Phylogeny of New World milkweed vines (Apocynaceae, Asclepiadoideae, Gonolobinae) and the evolution of growth form. Systematic Botany., 43 (1), 77.

Fishbein, M., Livshultz, T., Straub, SC. 2018. Evolution on the backbone: Apocynaceae phylogenomics and new perspectives on growth forms, flowers, and fruits. American Journal of Botany., 105(3), 495.

Fishbein, M., Straub, SC., Boutte, J. 2018. Evolution at the tips: Asclepias phylogenomics and new perspectives on leaf surfaces. American Journal of Botany., 105(3), 514.

Weitemier, K., Straub, SC., Fishbein, M., Bailey, CD., Cronn, RC., Liston, A. 2018. The genome and transcriptome of common milkweed (Asclepias syriaca): resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. PeerJ Preprints 6:e26488v1.

Fishbein, M., Gandhi, KN. 2018. Typification of Sarcostemma heterophyllum and Nomenclatural Notes in North American Funastrum (Apocynaceae). Novon : A Journal for Botanical Nomenclature /, 26(2), 165.

Thomson, S., Fishbein, M. 2018. Taxonomy based on science is necessary for global conservation. PLoS Biology., 16(3), E2005075.

Hu, Hao, Margarita Mauro-Herrera, and Andrew N. Doust. “Domestication and Improvement in the Model C4 Grass, Setaria.” Frontiers in Plant Science 9 (2018): 719. PMC. Web. 29 June 2018.

Henley, W.J., M. Cobbs, L. Novoveská & M.A. Buchheim. 2018. Phylogenetic analysis of Dunaliella (Chlorophyta) emphasizing new benthic and supralittoral isolates from Great Salt Lake. J. Phycol.

MA Gehan, N Fahlgren, A Abbasi, JC Berry, ST Callen L Chaves, AN Doust, MJ Feldman KB Gilbert, JG Hodge, JS Hoyer, A Lin, S Liu, C Lizárraga, A Lorence, M Miller, E Planton, M Tessman, T Sax. 2017. PlantCV v2: Image analysis software for high-throughput plant phenotyping. PeerJ 5 e4088

AN Doust, M Mauro-Herrera, JG Hodge, J Stromski. 2017. The C4 model grass Setaria is a short day plant with secondary long day genetic regulation. Frontiers in plant science 8, 1062

A Doust, X Diao. 2017. Genetics and Genomics of Setaria. Springer

AN Doust. 2017. The Effect of Photoperiod on Flowering Time, Plant Architecture, and Biomass in Setaria. Genetics and Genomics of Setaria, 197-210.

JG Hodge, AN Doust. 2017. Morphological Development of Setaria viridis from Germination to Flowering. Genetics and Genomics of Setaria, 161-175.

Fishbein M (2017) Taxonomic adjustments in North American Apocynaceae. Phytologia 99:86-88.

Justin Dee, Palmer M (2017) Annual rings of perennial forbs and mature oaks show similar effects of climate but inconsistent responses to fire in the North American prairie-forest ecotone.

Singh V, Nerimetla R, Yang M, Krishnan S (2017) Magnetite-quantum dot immunoarray for plasmon-coupled-fluorescence imaging of blood insulin and glycated hemoglobin. ACS Sensors, 2: 909-915.

Mandel, Jennifer, et al. [14 authors incl. Watson L; invited] (2017) The Compositae Tree of Life in the age of phylogenomics. Journal of Systematics and Evolution. 55: 405-410.

Fulton, Susannah B.J. and Watson L (2017) Phylogenetic systematics of Cochlospermaceae (Malvales) based on molecular and morphological evidence. Systematic Botany 42: 271-282.

Palmer M and D.J. McGlinn. (2017) Chapter 5: Scale detection using semivariograms and autocorrelograms. in S. E. Gergel and M. G. Turner, editors. Learning Landscape Ecology, A Practical Guide to Concepts and Techniques. 2nd Edition. p. 65-81.

AJ Harris, Justin Dee, Palmer M (2017) "The effects of taxonomic rank on climatic calibrations: A test using extant floras of United States countries"

Palmer M (2017) "How to write an effective manuscript in Vegetation science" (IAVS Bulletin 2017) 6-8.

Charles S. Eiseman, Tracy S. Feldman, Eric F. Lopresti, and Palmer M (2017) "First North American Records of Porphyrosela minuta Clarke (Lepidoptera: Gracillariidae", with Notes on its Native Congener, P. desmondiella (Clemens). Proceedings of the Entomological Society of Washington, 119(1):18-23.

Chuba D, Goyder D, Chase MW, Fishbein M (2017) Phylogenetics of the African Asclepias complex (Apocynaceae) based on three plastid DNA regions. Systematic Botany 42 (1), 148.