Recent Publications

Yang M, Wang Y, Guo L, Liu C-M (2021) Complex haploinsufficient interaction between APC11 and CYCLIN A1;2/TARDY ASYNCHRONOUS MEIOSIS in embryo development and seed germination in Arabidopsis. F1000Research,

Wu H, Hu M, Yang M (2021) Nymphaea colorata, another basal angiosperm species with bidirectional cytokinesis in microsporogenesis. Plant Signal Behav, DOI: 10.1080/15592324.2021.1913308

C. Eiseman, O. Lonsdale, J. Van Der Linden, T. Feldman, M.W. Palmer. 2021. Thirteen new species of Agromyzidae (Diptera) from the United States, with new host and distrivution records for 32 additional species. Zootaxa 4931 (1): 001-068.

Hu M, Bai M, Yang M*, Wu H* (2021) Cell polarity, asynchronous nuclear divisions, and bidirectional cytokinesis in male meiosis in Magnolia denudata. Protoplasma,
*Co-corresponding author.

Bachelot B., Alonso-Rodríguez A.M., Aldrich-Wolfe L., Cavaleri M.A., Reed S.C., and Wood T.E. (2020). Altered climate leads to positive density-dependent feedbacks in a tropical rainforest. Global Change Ecology.

Howe-kerr L., Bachelot B., Wright R.M., Kendel C.D.; Bay L.K., and Correa A.M.S. (2020). Symbiont community diversity is more variable in host genets that respond poorly to stress. Global Change Ecology.

Bachelot B., and C. Lee (2020). Disturbances can promote and hinder coexistence of competitors in on-going partner choice mutualism. The American Naturalist.

Govindarajulu, R., A.N. Henderson, Y. Xiao, S.R. Chaluvadi, M. Mauro-Herrera, M.L. Siddoway, C.Whipple, J.L. Bennetzen, K.M. Devos, A.N. Doust, J.S. Hawkins. 2020. Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum. bioRxiv, .

Straub, S. C. K., J. Boutte, M. Fishbein, and T. Livshultz. 2020. Enabling evolutionary studies at multiple scales in Apocynaceae through Hyb-Seq. Applications in Plant Sciences 8:e11400.

Fishbein, M. 2020. Apocynaceae. In Meyers, S., T. Jaster, K. E. Mitchell, and L. K. Hardison (eds). Flora of Oregon, Volume 2: Adoxaceae to Fagaceae. Botanical Research Institute of Texas Press, Fort Worth.

Yoo H*, Greene GH*, Yuan M*, Xu G, Burton D, Liu L, Marqués J and Dong X. (2020) Translational Regulation of Metabolic Dynamics during Effector-Triggered Immunity. Molecular Plant 13:88-98

Boute, J., M. Fishbein, A. Liston, and S. C. K. Straub. 2019. NGS-Indel Coder: A new pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (Asclepias). Molecular Phylogenetics and Evolution 139:106534.

Yu, Y., Hu, H. Doust, A.N., and E.A. Kellogg. 2019. Divergent gene expression networks underlie morphological diversity of abscission zones in grasses. New Phytologist. doi: 10.1111/nph.16087.

Yang LZ, Yang M (2019) Modeling biological oscillations: integration of short reaction pauses into a stationary model of a negative feedback loop generates sustained long oscillations. J Comp Biol, 26: 1050-1066

Henley, W.J. 2019. The past, present and future of algal continuous cultures in basic research and commercial applications. Algal Research (in press). (page proofs)

Katy E. Jones, Tomáš Fér, Roswitha E. Schmickl, Rebecca B. Dikow, Vicki A. Funk, Sonia Herrando‐Moraira, Paul R. Johnston, Norbert Kilian, Carolina M. Siniscalchi, Alfonso Susanna, Marek Slovák, Ramhari Thapa, Linda E. Watson, Jennifer R. Mandel. 2019. An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae. Applications in Plant Sciences. 10(7)

Meinke DW (2019) Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. New Phytol doi: 10.1111/nph.16071.

Gould, E., J. Sparks, M. Fishbein, and A. Agrawal. 2019. Integrated metabolic strategy: a mechanistic framework for predicting the evolution of carbon gain and water loss tradeoffs within plant clades. Journal of Ecology 107: 1633-1644.

Ollerton, J., Fishbein, M., et al. 2019. The diversity of pollination systems in large plant clades: Apocynaceae as a case study. Annals of Botany 123:311-325

Mandel, Jennifer R., Rebecca B. Dikow, Carolina M. Siniscalchia, Ramhari Thapaa, Linda E. Watson, and Vicki A. Funk. 2019. A fully resolved backbone phylogeny reveals numerous and explosive diversifications throughout the history of Asteraceae. Proceedings of the National Academy of Sciences. doi:10.1073/pnas.1903871116

Susannah B.J. and Watson, Linda. 2018 (invited special issue, Phylogenetic Exploration of Medicinal Plants Diversity). Comparing medicinal uses of Cochlospermaceae throughout its range with insights from molecular phylogenetics. Diversity. 10(4), 123;

He H, Bai M, Tong P, Hu Y, Yang M*, Wu H* (2018) CELLULASE 6 and MANNANASE 7 affect cell differentiation and silique dehiscence. Plant Physiol 176: 2186-2201. *Corresponding author.

Yang M, Yang LZ (2018) Determining a reasonable range of relative numerical tolerance values for simulating deterministic models of biochemical reactions. J Comp Biol DOI: 10.1089/cmb.2018.0026

McDonnell A, Parks M, and Fishbein M. 2018. Multilocus Phylogeny of New World milkweed vines (Apocynaceae, Asclepiadoideae, Gonolobinae) and the evolution of growth form. Systematic Botany., 43 (1), 77.

Fishbein, M., Livshultz, T., Straub, SC. 2018. Evolution on the backbone: Apocynaceae phylogenomics and new perspectives on growth forms, flowers, and fruits. American Journal of Botany., 105(3), 495.

Fishbein, M., Straub, SC., Boutte, J. 2018. Evolution at the tips: Asclepias phylogenomics and new perspectives on leaf surfaces. American Journal of Botany., 105(3), 514.

Weitemier, K., Straub, SC., Fishbein, M., Bailey, CD., Cronn, RC., Liston, A. 2018. The genome and transcriptome of common milkweed (Asclepias syriaca): resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. PeerJ Preprints 6:e26488v1.

Fishbein, M., Gandhi, KN. 2018. Typification of Sarcostemma heterophyllum and Nomenclatural Notes in North American Funastrum (Apocynaceae). Novon : A Journal for Botanical Nomenclature /, 26(2), 165.

Thomson, S., Fishbein, M. 2018. Taxonomy based on science is necessary for global conservation. PLoS Biology., 16(3), E2005075.

Henrik Hartmann, >Henry D Adams, William M Hammond, Günter Hoch, Simon M Landhäusser, Erin Wiley, Sönke Zaehle. 2018. Environmental and Experimental Botany Special issue: "Experiments with trees: from seedlings to ecosystems".

Hartmann, H., Adams, HD. 2018. Identifying differences in carbohydrate dynamics of seedlings and mature trees to improve carbon allocation in models for trees and forests. Environmental and Experimental Botany, 152, 7.

Li, W., Adams, HD.,(n.d.). The sweet side of global change–dynamic responses of non-structural carbohydrates to drought, elevated CO2 and nitrogen fertilization in tree species.

Manrique‐Alba, Adams, HD.,&. (n.d.). Stem radial growth and water storage responses to heat and drought vary between conifers with differing hydraulic strategies.

Hartmann, H., Adams, HD. (2018). Research frontiers for improving our understanding of drought‐induced tree and forest mortality. The New Phytologist, 218(1), 15.

Zhang H, Li W, Adams HD, et al. 2018. Responses of Woody Plant Functional Traits to Nitrogen Addition: A Meta-Analysis of Leaf Economics, Gas Exchange, and Hydraulic Traits. Frontiers in Plant Science. 2018;9:683. doi:10.3389/fpls.2018.00683.

Hu, Hao, Margarita Mauro-Herrera, and Andrew N. Doust. “Domestication and Improvement in the Model C4 Grass, Setaria.” Frontiers in Plant Science 9 (2018): 719. PMC. Web. 29 June 2018.

Henley, W.J., M. Cobbs, L. Novoveská & M.A. Buchheim. 2018. Phylogenetic analysis of Dunaliella (Chlorophyta) emphasizing new benthic and supralittoral isolates from Great Salt Lake. J. Phycol.

MA Gehan, N Fahlgren, A Abbasi, JC Berry, ST Callen L Chaves, AN Doust, MJ Feldman KB Gilbert, JG Hodge, JS Hoyer, A Lin, S Liu, C Lizárraga, A Lorence, M Miller, E Planton, M Tessman, T Sax. 2017. PlantCV v2: Image analysis software for high-throughput plant phenotyping. PeerJ 5 e4088

AN Doust, M Mauro-Herrera, JG Hodge, J Stromski. 2017. The C4 model grass Setaria is a short day plant with secondary long day genetic regulation. Frontiers in plant science 8, 1062

A Doust, X Diao. 2017. Genetics and Genomics of Setaria. Springer

AN Doust. 2017. The Effect of Photoperiod on Flowering Time, Plant Architecture, and Biomass in Setaria. Genetics and Genomics of Setaria, 197-210.

JG Hodge, AN Doust. 2017. Morphological Development of Setaria viridis from Germination to Flowering. Genetics and Genomics of Setaria, 161-175.

Fishbein M (2017) Taxonomic adjustments in North American Apocynaceae. Phytologia 99:86-88.

Adams HD, Zeppel MJB, Anderegg WRL, Hartmann H, Landhäusser SM, Tissue DT, Huxman TE, Hudson PJ, Franz TE, Allen CD, Anderegg LDL, Barron-Gafford GA, Beerling DJ, Breshears DD, Brodribb TJ, Bugmann H, Cobb RC, Collins AD, Dickman LT, Duan H, Ewers BE, Galiano L, Galvez DA, Garcia-Forner N, Gaylord ML, Germino AG, Gessler A, Hacke UG, Hakamada R, Hector A, Jenkins MW, Kane JM, Kolb TE, Law DJ, Lewis JD, Limousin J-M, Love DM, Macalady AK, Martinez-Vilalta J, Mencuccini M, Mitchell PJ, Muss JD, O'Brien MJ, O'Grady AP, Pangle RE, Pinkard EA, Piper FI, Plaut JA, Pockman WT, Quirk J, Reinhardt K, Ripullone F, Ryan MG, Sala A, Sevanto S, Sperry JS, Vargas R, Vennetier M, Way DA, Xu C, Yepez EA, McDowell NG (2017) A multi-species synthesis of physiological mechanisms in drought-induced tree mortality. Nature Ecology and Evolution. doi:10.1038/s41559-017-0248-x.

Smith AMS, Talhelm AF, Johnson DM, Sparks AM, Kolden CA, Yedinak KM, Apostol KG, Tinkham WT, Abatzoglu JT, Lutz JA, Davis AS, Pregitzer KS, Adams HD, Kremens RL (2017) Impacts of fire radiative energy density doses on Pinus contorta and Larix occidentalis seedling physiology and mortality. International Journal of Wildland Fire 26:82-94.

Grossiord C, Sevanto S, Adams HD, Collins AD, Dickman LT, McBranch N, Michaletz S, Stockton EA, Vigil M, McDowell NG (2017) Precipitation, not air temperature, drives functional responses of trees in semi-arid ecosystems. Journal of Ecology 105:163-175.

Grossiord C, Sevanto S, Dawson TE, Adams HD, Collins AD, Dickman LT, Newman BD, Stockton EA, McDowell NG (2017) Warming combined with more extreme precipitation regimes modifies the water sources of trees. New Phytologist 213: 584-596.

Justin Dee, Palmer M (2017) Annual rings of perennial forbs and mature oaks show similar effects of climate but inconsistent responses to fire in the North American prairie-forest ecotone. PDF

Singh V, Nerimetla R, Yang M, Krishnan S (2017) Magnetite-quantum dot immunoarray for plasmon-coupled-fluorescence imaging of blood insulin and glycated hemoglobin. ACS Sensors, 2: 909-915.

Mandel, Jennifer, et al. [14 authors incl. Watson L; invited] (2017) The Compositae Tree of Life in the age of phylogenomics. Journal of Systematics and Evolution. 55: 405-410.

Fulton, Susannah B.J. and Watson L (2017) Phylogenetic systematics of Cochlospermaceae (Malvales) based on molecular and morphological evidence. Systematic Botany 42: 271-282.

Palmer M and D.J. McGlinn. (2017) Chapter 5: Scale detection using semivariograms and autocorrelograms. in S. E. Gergel and M. G. Turner, editors. Learning Landscape Ecology, A Practical Guide to Concepts and Techniques. 2nd Edition. p. 65-81.

AJ Harris, Justin Dee, Palmer M (2017) "The effects of taxonomic rank on climatic calibrations: A test using extant floras of United States countries"

Palmer M (2017) "How to write an effective manuscript in Vegetation science" (IAVS Bulletin 2017) 6-8.

Charles S. Eiseman, Tracy S. Feldman, Eric F. Lopresti, and Palmer M (2017) "First North American Records of Porphyrosela minuta Clarke (Lepidoptera: Gracillariidae", with Notes on its Native Congener, P. desmondiella (Clemens)." Proceedings of the Entomological Society of Washington, 119(1):18-23.

Chuba D, Goyder D, Chase MW, Fishbein M (2017) Phylogenetics of the African Asclepias complex (Apocynaceae) based on three plastid DNA regions. Systematic Botany 42 (1), 148.